<?xml version="1.0" encoding="utf-8"?>
<journal>
<title>Research in Molecular Medicine</title>
<title_fa>Research in Molecular Medicine</title_fa>
<short_title>Res Mol Med (RMM)</short_title>
<subject>Medical Sciences</subject>
<web_url>http://rmm.mazums.ac.ir</web_url>
<journal_hbi_system_id>1</journal_hbi_system_id>
<journal_hbi_system_user>admin</journal_hbi_system_user>
<journal_id_issn>2322-1348</journal_id_issn>
<journal_id_issn_online>2322-133X</journal_id_issn_online>
<journal_id_pii></journal_id_pii>
<journal_id_doi>10.29252/rmm</journal_id_doi>
<journal_id_iranmedex></journal_id_iranmedex>
<journal_id_magiran></journal_id_magiran>
<journal_id_sid></journal_id_sid>
<journal_id_nlai></journal_id_nlai>
<journal_id_science></journal_id_science>
<language>en</language>
<pubdate>
	<type>jalali</type>
	<year>1396</year>
	<month>2</month>
	<day>1</day>
</pubdate>
<pubdate>
	<type>gregorian</type>
	<year>2017</year>
	<month>5</month>
	<day>1</day>
</pubdate>
<volume>5</volume>
<number>2</number>
<publish_type>online</publish_type>
<publish_edition>1</publish_edition>
<article_type>fulltext</article_type>
<articleset>
	<article>


	<language>en</language>
	<article_id_doi></article_id_doi>
	<title_fa></title_fa>
	<title>Bioinformatics Designing of 10-23 Deoxyribozyme against Coding Region of Beta-galactosidase Gene </title>
	<subject_fa>آمار زیستی</subject_fa>
	<subject>Biostatistics</subject>
	<content_type_fa>پژوهشي</content_type_fa>
	<content_type>Research</content_type>
	<abstract_fa></abstract_fa>
	<abstract>&lt;div style=&quot;text-align: justify;&quot;&gt;&lt;strong&gt;Background: &lt;/strong&gt;Deoxyribozymes (Dzs) can play a role as gene expression inhibitors at mRNA level. Among Dzs, the 10-23 deoxyribozyme has significant potentials for treatment of diseases. Designed Dz includes a catalytic core made of 15 deoxyribonucleotides and two binding arms consisted of 6-12 nucleotides for site specific binding to target RNA and hydrolysis. The enzyme has characteristic features for cleavage of the RNA target between an unpaired purine (A, G) and a paired pyrimidine (C or U). In this study, 10-23 Dz is designed for the coding region of the &amp;alpha;-peptide of a &lt;em&gt;lacZ&lt;/em&gt; gene.&lt;/div&gt;

&lt;div style=&quot;text-align: justify;&quot;&gt;&lt;strong&gt;Material and Methods: &lt;/strong&gt;The primary sequence of a plasmid with &amp;alpha;-complementation ability was taken from addgene database. To confirm sequence validity, ExPASy was used to analyze related ORFs for the retrieved sequence. The ORF with identical sequence to &amp;alpha;-peptide was selected in the reverse complement sequence. Subsequently, the secondary structure of the &amp;alpha;-peptide was analyzed in DINAMelt web server and Mfold software. Then the intended target site was selected inside the coding region of the &amp;alpha;-peptide. The Dzs sequence was designed for the target site with nucleotide binding arms.&lt;br&gt;
&lt;strong&gt;Results and conclusion:&lt;/strong&gt; The resulted Dz in this study can be used as a promising catalytic DNA inside bacterial cells for blue-white screening. Criteria such as biological stability and catalytic rate of such enzymes must be evaluated in vivo and in vitro.&lt;/div&gt;
</abstract>
	<keyword_fa></keyword_fa>
	<keyword>10-23 deoxyribozyme, gene expression, beta-galactosidase gene</keyword>
	<start_page>28</start_page>
	<end_page>33</end_page>
	<web_url>http://rmm.mazums.ac.ir/browse.php?a_code=A-10-751-2&amp;slc_lang=en&amp;sid=1</web_url>


<author_list>
	<author>
	<first_name>Nasrin al-Sadat</first_name>
	<middle_name></middle_name>
	<last_name>Ahmadi</last_name>
	<suffix></suffix>
	<first_name_fa></first_name_fa>
	<middle_name_fa></middle_name_fa>
	<last_name_fa></last_name_fa>
	<suffix_fa></suffix_fa>
	<email>nasrine_ahmadi@yahoo.com</email>
	<code>10031947532846006635</code>
	<orcid>10031947532846006635</orcid>
	<coreauthor>No</coreauthor>
	<affiliation>Cellular and Molecular Biology Division; Department of Biology; Faculty of Sciences, University of Isfahan; Isfahan; Iran</affiliation>
	<affiliation_fa></affiliation_fa>
	 </author>


	<author>
	<first_name>Abolghasem</first_name>
	<middle_name></middle_name>
	<last_name>Esmaeili</last_name>
	<suffix></suffix>
	<first_name_fa></first_name_fa>
	<middle_name_fa></middle_name_fa>
	<last_name_fa></last_name_fa>
	<suffix_fa></suffix_fa>
	<email>aesmaeili@sci.ui.ac.ir</email>
	<code>10031947532846006636</code>
	<orcid>10031947532846006636</orcid>
	<coreauthor>Yes
</coreauthor>
	<affiliation>Cellular and Molecular Biology Division; Department of Biology; Faculty of Sciences, University of Isfahan; Isfahan; Iran</affiliation>
	<affiliation_fa></affiliation_fa>
	 </author>


	<author>
	<first_name>Fatemeh</first_name>
	<middle_name></middle_name>
	<last_name>Javadi Zarnaghi</last_name>
	<suffix></suffix>
	<first_name_fa></first_name_fa>
	<middle_name_fa></middle_name_fa>
	<last_name_fa></last_name_fa>
	<suffix_fa></suffix_fa>
	<email>fa.javadi@sci.ui.ac.ir</email>
	<code>10031947532846006637</code>
	<orcid>10031947532846006637</orcid>
	<coreauthor>No</coreauthor>
	<affiliation>Cellular and Molecular Biology Division; Department of Biology; Faculty of Sciences, University of Isfahan; Isfahan; Iran</affiliation>
	<affiliation_fa></affiliation_fa>
	 </author>


</author_list>


	</article>
</articleset>
</journal>
